You have errors with your config files.
Code:
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_experience_blocks(line 92): Too many params, or incorrect value of "POWERS" parameter "ALARM", in [experience] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Warning: parse_creaturemodel_attributes_blocks(line 16): Unrecognized command (-2) in [attributes] block of global creature model config file.
Error: check_and_auto_fix_stats: Creature model 3 Learn Level for Empty Instance slot 8 - Fixing
Error: check_and_auto_fix_stats: Creature model 23 Heal Requirment > Heal Threshold - Fixing
Error: check_and_auto_fix_stats: Creature model 24 Learn Level for Empty Instance slot 9 - Fixing
Backup your files, and put in all the config files that come with alpha 2011 and see which of your problems disappear. If it's not all of them, try 'fixing' the map with adikted, so, both in column and thing mode press fix, save, and try again. If that still doesn't work, be sure to let me know and I'll help you further.
As for fog of war, do you know how it should work? There's only fog of war at the places you cannot go to at the start of the map. The new CHANGE_SLAP_TYPE script command can be used here if you want something different, simply make sure the player only has access to his dungeon heart or something and immediately open up with the script and the fog will remain.